In this paper, we describe an effort to build a new deep edge detection method designed to detect weather-related phenomena such as clouds and planetary boundary layer heights present in backscatter profile imagery. This method builds on the existing deep model called Holistically-Defined Edge Detection (HED), which was shown to perform better than other information theory and convolutional network techniques for edge detection. Though HED outperforms techniques such as Canny Edge detection, HED’s performance is based on it being trained on natural images with very little noise. Weather-related backscatter profiles, such as those generated from LIDAR-based ceilometers, often contain noise. In addition, there is often less of a difference in the pixel density between edges and non-edges, and due to atmospheric dynamics, continuous edges are not always detected in the images. Under these conditions when using HED, subtle but useful edges are lost from side outputs during the fusing process while the network is being trained. Canny Edge detection also does not perform well under these conditions, as it determines edges based on the differences in pixel density. We describe a new edge detection deep network developed specifically for overcoming these issues by applying physics-aware attention mechanisms to the side outputs of the HED learning process. We show how this method is able to learn the subtle edges as opposed to HED or Canny, when used to identify planetary boundary layer heights which involves distinguishing the mixing layer, residual layer, and nocturnal layer in addition to the cloud heights for ceilometerbased backscatter. Though the intent of this network is to learn planetary boundary layer heights and cloud heights, this method could be applied to other weather-related phenomena and applied to backscatter imagery generated from other sources such as satellites.
Understanding how the D-Wave quantum computer could be used for machine learning problems is of growing interest. Our work explores the feasibility of using the D-Wave as a sampler for a machine learning task. We describe a hybrid method that combines a classical deep neural network autoencoder with a quantum annealing Restricted Boltzmann Machine (RBM) using the D-Wave for image generation. Our method overcomes two key limitations in the 2000-qubit D-Wave processor, namely the limited number of qubits available to accommodate typical problem sizes for fully connected quantum objective functions, and samples that are binary pixel representations. As a consequence of these limitations we are able to show how we achieved nearly a 22-fold compression factor of grayscale 28 x 28 sized images to binary 6 x 6 sized images with a lossy recovery of the original 28 x 28 grayscale images. We further show how generating samples from the D-Wave after training the RBM, resulted in 28 x 28 images that were variations of the original input data distribution, as opposed to recreating the training samples. We evaluated the quality of this method by using a downstream classification method. We formulated a MNIST classification problem using a deep convolutional neural network that used samples from the quantum RBM to train the MNIST classifier and compared the results with a MNIST classifier trained with the original MNIST training data set, as well as a MNIST classifier trained using classical RBM samples. We also explored using a secondary dataset, the MNIST Fashion dataset and demonstrate the first quantum-generated fashion. Our hybrid autoencoder approach indicates advantage for RBM results relative to the use of a current RBM classical computer implementation for image-based machine learning and even more promising results for the next generation D-Wave quantum system. Our method for compression and image mappings is not constrained to RBMs, the autoencoder part of this method could be coupled with other quantum-based algorithms.
The cost of data-movement is one of the fundamental issues with modern compute systems processing Big Data workloads. One approach to move the computation closer to data is to equip the storage or memory devices with processing power. The notion of moving computation to data is known as Near Data Processing (NDP). In this work, we re-examine the idea of reducing the data movement by processing data directly in the storage devices. We evaluate ASTOR, a compute framework on an Active Storage platform, which incorporates a software stack and a dedicated multi-core processor for in-storage processing. ASTOR utilizes the processing power of storage devices by using an array of Active Drive™ devices to significantly reduce the bandwidth requirement on the network. We evaluate the performance and scalability of ASTOR for distributed processing of Big Data workloads. We conclude by discussing a comparative study of other existing data-centric approaches.
When it entered into the era of big data, Earth observing systems developed into a new stage, namely characterized by low cost, multi-national, multi-sensor and multi-modal with varying spatial and spectral resolutions confronting new challenges and opportunities. Climate data records from multiple data sources are used to infer seasonal and interannual variations which will advance and promote the development of data fusion methods. Compressed sensing is a new framework in which data acquisition and data processing are merged. It provides a new fantastic way to handle multiple observations of the same field view from complementary remote sensing instruments, allowing us to recover information at very low signal-to-noise ratio. We will particularly point out that a Compressive Sensing based framework is flexible enough for combining the two measurement systems by fusing the data from the two satellites, NASA Orbiting Carbon Observatory -2 (OCO-2) and the JAXA Greenhouse gases from Orbiting Satellites (GOSAT) to calculate the interannual Net XCO2 variability over land for three latitudinal regions, Alaska/Canada, United States and the Amazon/Brazil. The OCO-2 design is optimized for sensitivity to XCO2 variations, with an unprecedented combination of spatial resolution (about 3km) with narrow nadir coverage, while GOSAT provides broader spatial coverage (10km) with wider scanning coverage. There are different temporal degradations of both instruments over time because GOSAT was launched in 2009 and OCO-2 was launched in 2014. Both instruments infer CO2 concentration from high-resolution measurements of reflected sunlight and use similar inversion algorithms to retrieve CO2 concentrations. Both are passive satellites providing on-orbit global measurements of the greenhouse gas, XCO2, for the years 2015 -2018. The results of the CS data fusion framework show that the fused data have Root Mean Square Error (RMSE) varying from 1.31 ppm to 4.12 ppm compared with original data, depending on the region of study and gridding resolution. Validation of fused data compared with AmeriFlux station towers observations shows RMSE of 2.68 ppm.
We evaluate the use of TernausNet V2, a pre-trained VGG-16 U-net for segmentation of Green Fluorescent Protein (GFP) stained stem cells from giga pixel fluorescence microscopy images. Fluorescence microscopy is a difficult modality for automated stem cell segmentation algorithms due to high noise and low contrast. As such segmentation algorithms for cell counting and tracking typically yield more consistent results in other imaging modalities such as Phase Contrast (PC) microscopy due to greater ability to distinguish between foreground and background. Recent methods have shown that U-net based models can achieve state-of-the-art segmentation performance of GFP microscopy, although all available methods continue to overly segment the protein features and have difficulty capturing the entirety the cell. We investigate the use of TernausNet, a VGG-16 based U-Net architecture that was pre-trained from ImageNet and show that it is able to improve the accuracy of GFP stem cell segmentation on gigascale NIST fluorescence microscopy images in comparison to a baseline U-net model. Quantitative results show that the proposed TernausNet V2 architecture model is able to better distinguish the entire region of the cell and reduce overly segmenting proteins as compared to U-net. TernausNet achieved greater accuracy with ROC AUC of 0.956 and F1-Score of 0.810 as compared to the baseline U-net with AUC 0.936 and F1-Score 0.775. Therefore, we suggest that the TernausNet V2 architecture with transfer learning improves the performance of stem-cell segmentation is able to outperform U-net models for the segmentation of giga pixel GFP stained fluorescence microscopy images.
Increased greenhouse gasses reduce the transmission of Outgoing Longwave Radiation (OLR) to space along spectral absorption lines eventually causing the Earth’s temperature to rise in order to preserve energy equilibrium. This greenhouse forcing effect can be directly observed in the Outgoing Longwave Spectra (OLS) from space-borne infrared instruments with sufficiently high resolving power 3, 8. In 2001, Harries et. al observed significant increases in greenhouse forcings by direct inter-comparison of the IRIS spectra 1970 and the IMG spectra 19978. We have extended this effort by measuring the annual rate of change of AIRS all-sky Outgoing Longwave Spectra (OLS) with respect to greenhouse forcings. Our calculations make use of a 2°x2° degree monthly gridded Brightness Temperature (BT) product. Decadal trends for AIRS spectra from 2002-2012 indicate continued decrease of -0.06 K/yr in the trend of CO2 BT (700cm-1 and 2250cm-1), a decrease of -0.04 K/yr of O3 BT (1050 cm-1), and a decrease of -0.03 K/yr of the CH4 BT (1300cm-1). Observed decreases in BT trends are expected due to ten years of increased greenhouse gasses even though global surface temperatures have not risen substantially over the last decade.
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