Comparison of two approaches to oligo sets optimization

Grzegorz Tomczuk; Piotr Wasiewicz

doi:10.1117/12.610790

23 February 2005 Comparison of two approaches to oligo sets optimization

Grzegorz Tomczuk, Piotr Wasiewicz

Proceedings Volume 5775, Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments III; (2005) https://doi.org/10.1117/12.610790
Event: Wilga 2004, 2004, Wilga, Poland

Abstract

DNA computing provides new molecular mechanism for storing and processing information. DNA macrostructures are bases of specially designed algorithms realized by so called soft hardware applications. To obtain these structures a special DNA sequences design tool is required. In this paper comparison of two such computer programs was provided. In our program a custom genetic algorithm with new hybrid operators was involved in creating a set of DNA chains. The second program written by Winfree makes random changes using a given set of short constant forbidden fragments.

Citation Download Citation

Grzegorz Tomczuk and Piotr Wasiewicz "Comparison of two approaches to oligo sets optimization", Proc. SPIE 5775, Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments III, (23 February 2005); https://doi.org/10.1117/12.610790

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